Trump Gives Clemency to More Allies, Including Manafort, Stone and Charles Kushner

President Trump doled out clemency to a new group of loyalists on Wednesday, wiping away convictions and sentences as he aggressively employed his power to override courts, juries and prosecutors to apply his own standard of justice for his allies.

One recipient of a pardon was a family member, Charles Kushner, the father of his son-in-law, Jared Kushner. Two others who were pardoned declined to cooperate with prosecutors in connection with the special counsel’s Russia investigation: Paul Manafort, his 2016 campaign chairman, and Roger J. Stone Jr., his longtime informal adviser and friend.

They were the most prominent names in a batch of 26 pardons and three commutations disclosed by the White House after Mr. Trump left for his private club in Palm Beach, Fla., for the holiday.

Also on the list released on Wednesday was Margaret Hunter, the estranged wife of former Representative Duncan D. Hunter, Republican of California. Both of them had pleaded guilty to charges of misusing campaign funds for personal expenses.

Mr. Hunter was pardoned by Mr. Trump on Tuesday, as part of a first pre-Christmas wave of grants of clemency to 20 convicts, more than half of whom did not meet the Justice Department guidelines for consideration of pardons or commutations. They included a former Blackwater guard sentenced to life in prison for his role in the killing of 17 Iraqi civilians in 2007.

Of the 65 pardons and commutations that Mr. Trump had granted before Wednesday, 60 have gone to petitioners who had a personal tie to Mr. Trump or who helped his political aims, according to a tabulation by the Harvard Law School professor Jack Goldsmith. Although similar figures do not exist for previous presidents, legal experts say that those presidents granted a far lower percentage to those who could help them personally and politically.

The pardons to Mr. Manafort and Mr. Stone on the same day will be particularly stinging for the former special counsel Robert S. Mueller III and his team.

Neither man ever fully cooperated with prosecutors despite entering guilty pleas, leaving investigators to believe that private discussion of pardons and public statements by Mr. Trump may have compromised their ability to uncover the facts.

The pardons for Mr. Manafort and Mr. Stone reflected Mr. Trump’s grievances about the Mueller investigation, referring to the “Russian collusion hoax,” “prosecutorial misconduct” and “injustice.”

Mr. Manafort, 71, had been sentenced to seven and a half years in prison for his role in a decade-long, multimillion-dollar financial fraud scheme for his work in the former Soviet Union.

Mr. Stone, 68, whose 40-month prison sentence had previously been commuted by Mr. Trump, has maintained his innocence and insisted there was prosecutorial malfeasance. He was convicted on seven counts of lying to Congress, witness tampering and obstructing the House inquiry into possible Trump campaign coordination with Russia.

Mr. Kushner’s pardon has been one of the most anticipated of the Trump presidency. The father-in-law of the president’s older daughter, Ivanka Trump, Mr. Kushner’s prison sentence was a searing event in his family’s life.

Mr. Kushner, 66, pleaded guilty in 2004 to 16 counts of tax evasion, a single count of retaliating against a federal witness and one of lying to the Federal Election Commission in a case that was also a lurid family drama. He served two years in prison before being released in 2006.

The witness he was accused of retaliating against was his brother-in-law, whose along with his wife, Mr. Kushner’s sister, was cooperating with federal officials in a campaign finance investigation into Mr. Kushner.

In his plea agreement, Mr. Kushner acknowledged that he arranged to have a prostitute seduce his brother-in-law in a motel room in New Jersey where video cameras were installed. Mr. Kushner then had the videotape sent to his sister.

The case was prosecuted by then-U.S. Attorney Chris Christie, a longtime Trump friend who went on to become governor of New Jersey. Mr. Christie has recently been critical of Mr. Trump’s efforts to claim widespread fraud in the 2020 election results without offering proof.

Jared Kushner worked on criminal justice overhaul efforts in the White House in part because he was scarred, allies said, by his father’s time behind bars. And he had a tense relationship with Mr. Christie for years, helping to banish him from his role in running the transition almost immediately after Mr. Trump’s surprise election win in 2016.

In pardoning Mr. Manafort and Mr. Stone, Mr. Trump continued to chip away at the work of the Mueller investigation, which the president and his departing attorney general, William P. Barr, have attacked for the past two years. Mr. Trump had already pardoned or commuted the sentences of three others who had been prosecuted by Mr. Mueller’s office, including two on Tuesday.

The president has long complained that the investigation was a “witch hunt” and a “hoax” and pressured Mr. Barr to prosecute some of the officials he blamed for it, including Joseph R. Biden Jr., former President Barack Obama and James B. Comey, the F.B.I. director whom Mr. Trump fired.

Mr. Barr, whose last day in office was Wednesday, has echoed Mr. Trump’s criticism of the investigation and ordered an inquiry into its origins, but to the president’s frustration he did not prosecute anyone for it before last month’s election.

Mr. Barr had also moved to reduce the sentencing recommendation for Mr. Stone and to overturn guilty pleas entered by Michael T. Flynn, the president’s first national security adviser.

But Mr. Barr supported the prosecution of Mr. Stone, whereas Mr. Trump commuted Mr. Stone’s sentence in July and pardoned Mr. Flynn last month.

The president has long publicly dangled the prospect of pardons for associates caught up in investigations in a way that critics argued amounted to a bid to convince them to keep quiet about any wrongdoing they may have witnessed by Mr. Trump.

Even as he agreed to cooperate with the special counsel’s office, Mr. Manafort’s lead lawyer, Kevin M. Downing, continued to brief Mr. Trump’s personal lawyers, an unusual arrangement that raised questions about what side Mr. Manafort was on.

Some of Mr. Downing’s public statements also seemed aimed at generating sympathy for Mr. Manafort from the West Wing. Mr. Downing repeatedly said that prosecutors in the case had no evidence that the Trump campaign had conspired with Russia to influence the 2016 election, even though potential links to Moscow’s sabotage fell outside the purview of the trial.

Mr. Trump repeatedly expressed sympathy for Mr. Manafort, describing him as a brave man who had been mistreated by the special counsel’s office. After Mr. Manafort was sentenced in March 2019 to three and a half years in the conspiracy case, the president said, “I feel very badly for Paul Manafort.”

Mr. Manafort was released early from prison in May as a result of the coronavirus pandemic and given home confinement instead.

Mr. Manafort is not completely out of legal trouble, with a state case in New York still not entirely resolved.

The Manhattan District Attorney, Cyrus R. Vance Jr., charged Mr. Manafort with mortgage fraud and more than a dozen other state felonies in March 2019 in an effort to ensure that he would still face prosecution should Mr. Trump eventually pardon him. Presidential pardons only apply to federal, not state, laws.

But in December of that year, a New York trial judge ruled that the indictment violated the state’s double jeopardy law, a decision that was upheld by an appeals court in October of this year.

Mr. Vance’s office, which has sought leave to appeal that ruling to the state’s highest tribunal, the court of appeals, said in a statement Wednesday night that the president’s pardon of Mr. Manafort makes clear that the state charges should be upheld.

Other presidents have made extensive use of clemency power in their final days in office, sometimes benefiting political allies or people close to them.

President Bill Clinton on his last day in office in 2001 pardoned or commuted the sentences of more than 175 people, including his half brother Roger Clinton, who had been convicted on drug charges, and his former Whitewater business partner Susan H. McDougal, who had been locked up for refusing to cooperate with Ken Starr’s team investigating the president.

But Mr. Clinton came under especially intense criticism for his pardon of Marc Rich, a financier who had fled the United States to avoid tax charges and whose ex-wife donated large sums to Mr. Clinton’s future presidential library.

Among those particularly enraged by the pardon of Mr. Rich was Rudolph W. Giuliani, who had been the U.S. attorney whose office prosecuted Mr. Rich and is now the president’s personal lawyer. “He never paid a price,” Mr. Giuliani said in 2001 about Mr. Rich.

After losing re-election in 1992, President George Bush pardoned former Defense Secretary Caspar W. Weinberger and five others targeted by prosecutors in the Iran-contra scandal. Mr. Bush was convinced that a new indictment against Mr. Weinberger that challenged the president’s account of his own actions issued days before the election helped seal his defeat. The independent counsel Lawrence E. Walsh accused Mr. Bush of a “cover-up.”

Such actions were sharply criticized at the time as abuses of power and in Mr. Clinton’s case even investigated for evidence of wrongdoing.

But a president’s pardon authority under the Constitution is expansive and not ordinarily subject to the approval of any other part of government. Some legal scholars have argued that the corrupt use of the pardon power — in response to a bribe, for instance, or to obstruct justice — could be a crime, but it has never been tested.

The small number of pardons presidents granted that were given to those who had not been convicted were usually tied to a national event a president was trying to put behind the country, like the Nixon presidency or the Vietnam War.

Peter Baker contributed reporting.